Prediction of noncovalent interactions for PDB structure COMPLEX_1_PROTEIN
==========================================================================
Created on 2025/12/04 using PLIP v2.2.2

If you are using PLIP in your work, please cite:
Adasme,M. et al. PLIP 2021: expanding the scope of the protein-ligand interaction profiler to DNA and RNA. Nucl. Acids Res. (05 May 2021), gkab294. doi: 10.1093/nar/gkab294
Analysis was done on model 1.

UNK:d:0 (UNK) - SMALLMOLECULE
-----------------------------
Interacting chain(s): B,D,F


**Hydrophobic Interactions**
+-------+---------+----------+-----------+-------------+--------------+------+--------------+---------------+-----------------------+------------------------+
| RESNR | RESTYPE | RESCHAIN | RESNR_LIG | RESTYPE_LIG | RESCHAIN_LIG | DIST | LIGCARBONIDX | PROTCARBONIDX | LIGCOO                | PROTCOO                | 
+=======+=========+==========+===========+=============+==============+======+==============+===============+=======================+========================+
| 9     | PHE     | D        | 0         | UNK         | d            | 3.57 | 24           | 8164          | 58.617, 6.433, 13.719 | 57.193, 4.328, 11.206  | 
+-------+---------+----------+-----------+-------------+--------------+------+--------------+---------------+-----------------------+------------------------+
| 9     | PHE     | D        | 0         | UNK         | d            | 3.84 | 18           | 8162          | 61.139, 6.882, 12.033 | 58.262, 4.848, 10.502  | 
+-------+---------+----------+-----------+-------------+--------------+------+--------------+---------------+-----------------------+------------------------+
| 117   | LYS     | F        | 0         | UNK         | d            | 3.71 | 28           | 14135         | 59.118, 8.717, 14.328 | 59.524, 12.205, 13.127 | 
+-------+---------+----------+-----------+-------------+--------------+------+--------------+---------------+-----------------------+------------------------+
| 117   | LYS     | F        | 0         | UNK         | d            | 3.45 | 13           | 14136         | 60.255, 10.123, 9.527 | 59.221, 12.609, 11.683 | 
+-------+---------+----------+-----------+-------------+--------------+------+--------------+---------------+-----------------------+------------------------+
| 120   | GLU     | F        | 0         | UNK         | d            | 3.78 | 27           | 14169         | 58.294, 8.599, 15.447 | 61.427, 7.074, 16.904  | 
+-------+---------+----------+-----------+-------------+--------------+------+--------------+---------------+-----------------------+------------------------+
| 120   | GLU     | F        | 0         | UNK         | d            | 3.71 | 23           | 14168         | 59.279, 7.634, 13.464 | 62.197, 6.933, 15.639  | 
+-------+---------+----------+-----------+-------------+--------------+------+--------------+---------------+-----------------------+------------------------+


**Hydrogen Bonds**
+-------+---------+----------+-----------+-------------+--------------+-----------+----------+----------+-----------+-----------+----------+-----------+-------------+--------------+-----------------------+------------------------+
| RESNR | RESTYPE | RESCHAIN | RESNR_LIG | RESTYPE_LIG | RESCHAIN_LIG | SIDECHAIN | DIST_H-A | DIST_D-A | DON_ANGLE | PROTISDON | DONORIDX | DONORTYPE | ACCEPTORIDX | ACCEPTORTYPE | LIGCOO                | PROTCOO                | 
+=======+=========+==========+===========+=============+==============+===========+==========+==========+===========+===========+==========+===========+=============+==============+=======================+========================+
| 1     | GLY     | D        | 0         | UNK         | d            | False     | 2.38     | 3.27     | 144.04    | True      | 8096     | N3+       | 9           | O.co2        | 56.660, 14.011, 8.265 | 53.700, 12.619, 8.312  | 
+-------+---------+----------+-----------+-------------+--------------+-----------+----------+----------+-----------+-----------+----------+-----------+-------------+--------------+-----------------------+------------------------+
| 116   | ASN     | B        | 0         | UNK         | d            | True      | 2.75     | 3.28     | 114.11    | True      | 4327     | Nam       | 44          | O3           | 55.847, 8.569, 21.316 | 53.747, 7.338, 23.511  | 
+-------+---------+----------+-----------+-------------+--------------+-----------+----------+----------+-----------+-----------+----------+-----------+-------------+--------------+-----------------------+------------------------+
| 116   | ASN     | F        | 0         | UNK         | d            | True      | 3.13     | 4.10     | 167.25    | True      | 14125    | Nam       | 33          | O3           | 57.943, 6.312, 18.601 | 59.067, 10.196, 17.941 | 
+-------+---------+----------+-----------+-------------+--------------+-----------+----------+----------+-----------+-----------+----------+-----------+-------------+--------------+-----------------------+------------------------+
| 117   | LYS     | F        | 0         | UNK         | d            | True      | 3.01     | 3.93     | 148.98    | True      | 14138    | N3+       | 50          | O3           | 58.669, 15.538, 7.046 | 58.182, 14.634, 10.836 | 
+-------+---------+----------+-----------+-------------+--------------+-----------+----------+----------+-----------+-----------+----------+-----------+-------------+--------------+-----------------------+------------------------+
| 120   | GLU     | B        | 0         | UNK         | d            | True      | 2.49     | 2.92     | 106.09    | False     | 40       | O.co2     | 4373        | O2           | 60.188, 5.170, 20.951 | 58.814, 4.987, 23.519  | 
+-------+---------+----------+-----------+-------------+--------------+-----------+----------+----------+-----------+-----------+----------+-----------+-------------+--------------+-----------------------+------------------------+
| 124   | ARG     | B        | 0         | UNK         | d            | True      | 3.18     | 4.09     | 150.72    | True      | 4424     | Ng+       | 42          | O3           | 58.334, 7.288, 22.103 | 61.278, 7.288, 24.940  | 
+-------+---------+----------+-----------+-------------+--------------+-----------+----------+----------+-----------+-----------+----------+-----------+-------------+--------------+-----------------------+------------------------+
| 124   | ARG     | B        | 0         | UNK         | d            | True      | 3.40     | 3.96     | 117.85    | True      | 4425     | Ng+       | 40          | O.co2        | 60.188, 5.170, 20.951 | 62.909, 6.775, 23.346  | 
+-------+---------+----------+-----------+-------------+--------------+-----------+----------+----------+-----------+-----------+----------+-----------+-------------+--------------+-----------------------+------------------------+
| 124   | ARG     | F        | 0         | UNK         | d            | True      | 3.03     | 3.97     | 156.23    | True      | 14222    | Ng+       | 29          | O3           | 57.152, 5.137, 15.078 | 60.595, 4.220, 13.335  | 
+-------+---------+----------+-----------+-------------+--------------+-----------+----------+----------+-----------+-----------+----------+-----------+-------------+--------------+-----------------------+------------------------+


**Salt Bridges**
+-------+---------+----------+----------------+-----------+-------------+--------------+------+-----------+-------------+--------------+-----------------------+------------------------+
| RESNR | RESTYPE | RESCHAIN | PROT_IDX_LIST  | RESNR_LIG | RESTYPE_LIG | RESCHAIN_LIG | DIST | PROTISPOS | LIG_GROUP   | LIG_IDX_LIST | LIGCOO                | PROTCOO                | 
+=======+=========+==========+================+===========+=============+==============+======+===========+=============+==============+=======================+========================+
| 117   | LYS     | F        | 14138          | 0         | UNK         | d            | 4.13 | True      | Carboxylate | 8,9          | 56.361, 13.444, 7.322 | 58.182, 14.634, 10.836 | 
+-------+---------+----------+----------------+-----------+-------------+--------------+------+-----------+-------------+--------------+-----------------------+------------------------+
| 117   | LYS     | F        | 14138          | 0         | UNK         | d            | 4.14 | True      | Carboxylate | 1,11         | 59.793, 12.181, 7.913 | 58.182, 14.634, 10.836 | 
+-------+---------+----------+----------------+-----------+-------------+--------------+------+-----------+-------------+--------------+-----------------------+------------------------+
| 123   | ARG     | B        | 4405,4407,4408 | 0         | UNK         | d            | 5.09 | True      | Carboxylate | 40,39        | 59.353, 4.624, 20.401 | 61.460, 2.336, 24.434  | 
+-------+---------+----------+----------------+-----------+-------------+--------------+------+-----------+-------------+--------------+-----------------------+------------------------+



